graphpype.pipelines.create_pipeline_nii_to_conmat(main_path, filter_gm_threshold=0.9, pipeline_name='nii_to_conmat', conf_interval_prob=0.05, background_val=-1.0, plot=True, reslice=False, resample=False, min_BOLD_intensity=50, percent_signal=0.5, split=False, win_length=None, offset=None)[source]¶Pipeline from nifti 4D (after preprocessing) to connectivity matrices
Inputs (inputnode):
- nii_4D_file
- rp_file
- ROI_mask_file
- gm_anat_file
- wm_anat_file
- csf_anat_file
- ROI_coords_file
- ROI_MNI_coords_file
- ROI_labels_file
Comments:
Typically used after nipype preprocessing pipeline and before conmat_to_graph pipeline