graphpype.pipelines.create_pipeline_nii_to_conmat_seg_template(main_path, pipeline_name='nii_to_conmat', conf_interval_prob=0.05)[source]¶Pipeline from nifti 4D (after preprocessing) to connectivity matrices
Inputs (inputnode):
- nii_4D_file
- rp_file
- wm_anat_file
- csf_anat_file
- ROI_mask_file
- ROI_coords_file
- ROI_MNI_coords_file
- ROI_labels_file
Comments:
Typically used after nipype preprocessing pipeline and before conmat_to_graph pipeline