graphpype.pipelines.create_pipeline_nii_to_subj_ROI(main_path, filter_gm_threshold=0.9, pipeline_name='nii_to_subj_ROI', background_val=-1.0, plot=True, reslice=False, resample=False, min_BOLD_intensity=50, percent_signal=0.5)[source]¶Pipeline from nifti 4D (after preprocessing) to connectivity matrices Use Grey matter for having a mask for each subject
Inputs (inputnode):
- nii_4D_file
- gm_anat_file
- ROI_mask_file
- ROI_coords_file
- ROI_MNI_coords_file
- ROI_labels_file
Comments:
Typically used after nipype preprocessing pipeline and before conmat_to_graph pipeline