ephypype.interfaces.mne.LFComputation

class ephypype.interfaces.mne.LFComputation(from_file=None, resource_monitor=None, ignore_exception=False, **inputs)

Compute the Lead Field matrix using MNE Python functions.

Parameters:

sbj_idstr

subject name

subjects_dirstr

Freesurfer directory

raw_filenamestr

filename of the raw data

spacingstr (default ‘ico-5’)

spacing to use to setup a source space

aseg: bool (defualt False)

if True a mixed source space will be created and the sub cortical regions defined in aseg_labels will be added to the source space

aseg_labels: list (default [])

list of substructures we want to include in the mixed source space

save_mixed_src_space: bool (default False)

if True save the mixed src space

Returns:

fwd_filenamestr

Filename of the Lead Field matrix

__init__(from_file=None, resource_monitor=None, ignore_exception=False, **inputs)

Subclasses must implement __init__

Methods

__init__([from_file, resource_monitor, ...])	Subclasses must implement __init__
aggregate_outputs([runtime, needed_outputs])	Collate expected outputs and apply output traits validation.
help([returnhelp])	Prints class help
load_inputs_from_json(json_file[, overwrite])	A convenient way to load pre-set inputs from a JSON file.
run([cwd, ignore_exception])	Execute this interface.
save_inputs_to_json(json_file)	A convenient way to save current inputs to a JSON file.

Attributes

always_run	Should the interface be always run even if the inputs were not changed? Only applies to interfaces being run within a workflow context.
can_resume	Defines if the interface can reuse partial results after interruption.
resource_monitor
version	interfaces should implement a version property